Pre-Pro.cessing of Data |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
Interplate Calibration |
✔ | ✔ | ✔ |
PCR Efficiency Correction |
✔ | ✔ | ✔ |
Normalize to Sample amount |
✔ | ✔ | ✔ |
Normalize to Reference Genes/Samples |
✔ | ✔ | ✔ |
Normalize to Technical Replicates(e.g qPCR, RT) |
✔ | ✔ | ✔ |
NormFinder Normalization |
✔ | ✔ | ✔ |
Normalize to Spike |
✔ | ✔ | ✔ |
Missing data Handling & Primer-dimer Correction |
✔ | ✔ | ✔ |
ValidPrime |
✔ | ✔ | ✔ |
RT-Correction |
✔ | ✔ | ✔ |
Test for Outliers |
✔ | ✔ | ✔ |
Negative Control |
✔ | ✔ | ✔ |
Internal amplification control |
✔ | ✔ | ✔ |
Expression Pro.files (Line plot) |
✔ | ✔ | ✔ |
Gene quality (Bar plot) |
✔ | ✔ | ✔ |
Hemolysis plot |
|
✔ | ✔ |
Spread of genes (Boxplot) |
✔ | ✔ | ✔ |
Relative Quantities & Fold Changes |
✔ | ✔ | ✔ |
Finding Optimal Reference Genes |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
geNorm |
✔ | ✔ | ✔ |
NormFinder |
✔ | ✔ | ✔ |
Plots |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
Scatter plots |
✔ | ✔ | ✔ |
Line plots |
✔ | ✔ | ✔ |
Bar Plot |
✔ | ✔ | ✔ |
Box and Whiskers Plot |
✔ | ✔ | ✔ |
Principal Component Analyses |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
PCA |
|
✔ | ✔ |
P-Curve |
|
|
✔ |
Dynamic PCA |
|
|
✔ |
Cluster Analyses |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
Hierarchical Clustering/Dendrogram |
✔ | ✔ | ✔ |
Heatmap Analysis |
|
✔ | ✔ |
Networks |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
Selforganizing MAP (SOM) |
|
✔ | ✔ |
Artificial Neural Network (ANN) |
|
|
✔ |
Support Vector Machine (SVM) |
|
|
✔ |
Regression Analysis |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
Standrad Curve |
✔ | ✔ | ✔ |
CLSI EP6- Linearity test |
|
|
✔ |
Reverse Calibration |
|
✔ | ✔ |
Limit of Detection |
|
✔ | ✔ |
Partial List Square |
|
|
✔ |
Limit of Quantification |
|
|
✔ |
Statistics |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
Descriptive Statistics |
✔ | ✔ | ✔ |
Parametric t-tests |
✔ | ✔ | ✔ |
Non-parametric tests |
✔ | ✔ | ✔ |
One-way ANOVA |
✔ | ✔ | ✔ |
Two-way ANOVA |
|
✔ | ✔ |
Nested ANOVA |
|
✔ | ✔ |
Repeated Measures (Anova) |
|
✔ | ✔ |
Histogram |
|
✔ | ✔ |
Boxplot Groups |
✔ | ✔ | ✔ |
Correlation |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
Spearsman Rank Correlation Coefficient |
✔ | ✔ | ✔ |
Pearson Correlation Coefficient |
✔ | ✔ | ✔ |
Scatter plot (samples, Genes, Groups) |
✔ | ✔ | ✔ |
Experimenta Design |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
Sample Size |
|
✔ | ✔ |
Experimental Design Optimization |
|
|
✔ |
Diagnostics |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
Survival Analyse |
|
|
✔ |
ROC Analyse |
|
|
✔ |
Quality Ctrl |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
Uniformity test |
|
|
✔ |
CLSI EP5-A Eval of Precision Performance |
|
|
✔ |
CLSI EP15-A2 User Verfication of Performance for Precision and Trueness |
|
|
✔ |
3-Way |
GenEx™ Std. |
GenEx™ Pro. |
GenEx™ Ent. |
3-Way analyse |
|
|
✔ |